IL_6YLX_047

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

6YLX|1|1|G|1236, 6YLX|1|1|U|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YLX_047 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.5348

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6YLX|1|1|G|1234
6YLX|1|1|U|1235
6YLX|1|1|G|1236
6YLX|1|1|G|1237
6YLX|1|1|C|1238
*
6YLX|1|1|G|1250
6YLX|1|1|A|1251
6YLX|1|1|A|1252
6YLX|1|1|U|1253
6YLX|1|1|C|1254

Current chains

Chain 1

25S rRNA

Nearby chains

Chain W

Ribosome assembly factor MRT4

Chain r

Ribosome biogenesis protein NSA2