IL_6YLX_050
3D structure
- PDB id
- 6YLX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE1 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGACGAAGC*GUCGAA
- Length
- 15 nucleotides
- Bulged bases
- 6YLX|1|1|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YLX_050 not in the Motif Atlas
- Geometric match to IL_6CZR_143
- Geometric discrepancy: 0.3643
- The information below is about IL_6CZR_143
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37722.1
- Basepair signature
- cWW-L-tSH-L-tHW-tHS-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6YLX|1|1|U|1388
6YLX|1|1|G|1389
6YLX|1|1|A|1390
6YLX|1|1|C|1391
6YLX|1|1|G|1392
6YLX|1|1|A|1393
6YLX|1|1|A|1394
6YLX|1|1|G|1395
6YLX|1|1|C|1396
*
6YLX|1|1|G|1414
6YLX|1|1|U|1415
6YLX|1|1|C|1416
6YLX|1|1|G|1417
6YLX|1|1|A|1418
6YLX|1|1|A|1419
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4-A
- Chain E
- 60S ribosomal protein L6-A
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain e
- 60S ribosomal protein L32
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