IL_6YLX_073

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GACUG*CAUAGCAUUGAUUUAUGGAUUAAC

Length

29 nucleotides

Bulged bases

6YLX|1|1|A|2131, 6YLX|1|1|G|2187, 6YLX|1|1|U|2191, 6YLX|1|1|A|2313, 6YLX|1|1|U|2314, 6YLX|1|1|G|2315, 6YLX|1|1|U|2318

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YLX|1|1|G|2130
6YLX|1|1|A|2131
6YLX|1|1|C|2132
6YLX|1|1|U|2133
6YLX|1|1|G|2134
*
6YLX|1|1|C|2146
6YLX|1|1|A|2147
6YLX|1|1|U|2148
6YLX|1|1|A|2149
6YLX|1|1|G|2150
6YLX|1|1|C|2151
6YLX|1|1|A|2152
6YLX|1|1|U|2153
6YLX|1|1|U|2186
6YLX|1|1|G|2187
6YLX|1|1|A|2188
6YLX|1|1|U|2189
6YLX|1|1|U|2190
6YLX|1|1|U|2191
6YLX|1|1|A|2313
6YLX|1|1|U|2314
6YLX|1|1|G|2315
6YLX|1|1|G|2316
6YLX|1|1|A|2317
6YLX|1|1|U|2318
6YLX|1|1|U|2319
6YLX|1|1|A|2320
6YLX|1|1|A|2321
6YLX|1|1|C|2322

Current chains

Chain 1

25S rRNA

Nearby chains