IL_6YLX_076

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUCUU*GAGUGAGC

Length

14 nucleotides

Bulged bases

6YLX|1|1|G|2945, 6YLX|1|1|A|2946

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YLX|1|1|G|2878
6YLX|1|1|C|2879
6YLX|1|1|U|2880
6YLX|1|1|C|2881
6YLX|1|1|U|2882
6YLX|1|1|U|2883
*
6YLX|1|1|G|2939
6YLX|1|1|A|2940
6YLX|1|1|G|2943
6YLX|1|1|U|2944
6YLX|1|1|G|2945
6YLX|1|1|A|2946
6YLX|1|1|G|2947
6YLX|1|1|C|2948

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L16-A

Chain V

60S ribosomal protein L23-A

Chain b

Nucleolar GTP-binding protein 1