IL_6YMK_011

3D structure

PDB id

6YMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the SAM-SAH riboswitch with AMP

Experimental method

X-RAY DIFFRACTION

Resolution

2.03 Å

Loop

Sequence

U(CBV)A*UGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YMK_011 not in the Motif Atlas

Geometric match to IL_8C3A_130

Geometric discrepancy: 0.0642

The information below is about IL_8C3A_130

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6YMK|1|O|U|9
6YMK|1|O|CBV|10
6YMK|1|O|A|11
*
6YMK|1|O|U|28
6YMK|1|O|G|29
6YMK|1|O|A|30

Current chains

Chain O

Chains: A,C,F,I,M,O

Nearby chains

Chain F

Chains: A,C,F,I,M,O

Chain I

Chains: A,C,F,I,M,O