IL_6YS3_008
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YS3_008 not in the Motif Atlas
- Homologous match to IL_5J7L_245
- Geometric discrepancy: 0.0807
- The information below is about IL_5J7L_245
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YS3|1|b|G|24
6YS3|1|b|U|25
6YS3|1|b|G|26
6YS3|1|b|G|27
6YS3|1|b|A|28
6YS3|1|b|U|29
6YS3|1|b|G|30
*
6YS3|1|b|C|510
6YS3|1|b|U|511
6YS3|1|b|G|512
6YS3|1|b|A|513
6YS3|1|b|A|514
6YS3|1|b|A|515
6YS3|1|b|C|516
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L32
- Chain q
- 50S ribosomal protein L20
- Chain s
- 50S ribosomal protein L22
- Chain z
- Gamma-crystallin B
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