IL_6YS3_039

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6YS3|1|b|U|1014

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YS3_039 not in the Motif Atlas

Homologous match to IL_4WF9_038

Geometric discrepancy: 0.1353

The information below is about IL_4WF9_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6YS3|1|b|G|1013
6YS3|1|b|U|1014
6YS3|1|b|C|1015
*
6YS3|1|b|G|1151
6YS3|1|b|C|1152

Current chains

Chain b

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L13

Chain q

50S ribosomal protein L20