IL_6YS3_041
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 6YS3|1|b|A|1129, 6YS3|1|b|U|1132
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YS3_041 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.078
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
6YS3|1|b|G|1026
6YS3|1|b|G|1027
6YS3|1|b|G|1028
6YS3|1|b|A|1029
6YS3|1|b|A|1030
6YS3|1|b|A|1031
6YS3|1|b|C|1032
*
6YS3|1|b|G|1126
6YS3|1|b|G|1127
6YS3|1|b|A|1128
6YS3|1|b|A|1129
6YS3|1|b|G|1130
6YS3|1|b|A|1131
6YS3|1|b|U|1132
6YS3|1|b|G|1133
6YS3|1|b|U|1134
6YS3|1|b|A|1135
6YS3|1|b|A|1136
6YS3|1|b|C|1137
6YS3|1|b|G|1138
6YS3|1|b|G|1139
6YS3|1|b|G|1140
6YS3|1|b|G|1141
6YS3|1|b|C|1142
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain a
- 5S ribosomal RNA; 5S rRNA
- Chain d
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L13
- Chain m
- 50S ribosomal protein L16
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