IL_6YS3_054

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UUACUGC*GCAUCAGGUA

Length

17 nucleotides

Bulged bases

6YS3|1|b|U|1586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YS3|1|b|U|1413
6YS3|1|b|U|1414
6YS3|1|b|A|1415
6YS3|1|b|C|1416
6YS3|1|b|U|1417
6YS3|1|b|G|1418
6YS3|1|b|C|1419
*
6YS3|1|b|G|1583
6YS3|1|b|C|1584
6YS3|1|b|A|1585
6YS3|1|b|U|1586
6YS3|1|b|C|1587
6YS3|1|b|A|1588
6YS3|1|b|G|1589
6YS3|1|b|G|1590
6YS3|1|b|U|1591
6YS3|1|b|A|1592

Current chains

Chain b

23S rRNA

Nearby chains