IL_6YS3_055

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

6YS3|1|b|A|1422

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YS3_055 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.1432

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6YS3|1|b|C|1419
6YS3|1|b|G|1420
6YS3|1|b|A|1421
6YS3|1|b|A|1422
6YS3|1|b|G|1423
*
6YS3|1|b|C|1579
6YS3|1|b|U|1580
6YS3|1|b|A|1581
6YS3|1|b|A|1582
6YS3|1|b|G|1583

Current chains

Chain b

23S rRNA

Nearby chains