IL_6YS3_061

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

6YS3|1|b|A|1492

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YS3_061 not in the Motif Atlas

Homologous match to IL_5J7L_302

Geometric discrepancy: 0.3342

The information below is about IL_5J7L_302

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6YS3|1|b|C|1491
6YS3|1|b|A|1492
6YS3|1|b|G|1493
*
6YS3|1|b|C|1501
6YS3|1|b|G|1502

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2