IL_6YS3_078
3D structure
- PDB id
- 6YS3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.58 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 6YS3|1|b|A|1942, 6YS3|1|b|U|1948
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YS3_078 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1395
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
6YS3|1|b|C|1938
6YS3|1|b|G|1939
6YS3|1|b|A|1940
6YS3|1|b|A|1941
6YS3|1|b|A|1942
6YS3|1|b|U|1943
6YS3|1|b|U|1944
6YS3|1|b|C|1945
6YS3|1|b|C|1946
6YS3|1|b|U|1947
6YS3|1|b|U|1948
6YS3|1|b|G|1949
*
6YS3|1|b|C|1965
6YS3|1|b|C|1966
6YS3|1|b|U|1967
6YS3|1|b|G|1968
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L2
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