IL_6YS3_115

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

6YS3|1|b|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YS3_115 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4471

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6YS3|1|b|C|274
6YS3|1|b|C|275
6YS3|1|b|U|276
6YS3|1|b|G|277
6YS3|1|b|A|278
6YS3|1|b|A|279
6YS3|1|b|U|280
6YS3|1|b|C|281
*
6YS3|1|b|G|359
6YS3|1|b|U|360
6YS3|1|b|G|361
6YS3|1|b|A|362
6YS3|1|b|G|363

Current chains

Chain b

23S rRNA

Nearby chains