IL_6YS5_008

3D structure

PDB id

6YS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

6YS5|1|3|C|1051

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YS5_008 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.0788

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

6YS5|1|3|U|1049
6YS5|1|3|G|1050
6YS5|1|3|C|1051
6YS5|1|3|A|1052
6YS5|1|3|U|1053
*
6YS5|1|3|A|1201
6YS5|1|3|U|1202
6YS5|1|3|G|1203

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S3

Chain k

30S ribosomal protein S10

Chain o

30S ribosomal protein S14