IL_6YS5_014
3D structure
- PDB id
- 6YS5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUGC*GAGGAAG
- Length
- 11 nucleotides
- Bulged bases
- 6YS5|1|3|U|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YS5_014 not in the Motif Atlas
- Homologous match to IL_5J7L_053
- Geometric discrepancy: 0.0942
- The information below is about IL_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42032.1
- Basepair signature
- cWW-cSH-cWW-tWH-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6YS5|1|3|C|1155
6YS5|1|3|U|1156
6YS5|1|3|G|1157
6YS5|1|3|C|1158
*
6YS5|1|3|G|1172
6YS5|1|3|A|1173
6YS5|1|3|G|1174
6YS5|1|3|G|1175
6YS5|1|3|A|1176
6YS5|1|3|A|1177
6YS5|1|3|G|1178
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain j
- 30S ribosomal protein S9
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