IL_6YS5_017

3D structure

PDB id

6YS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAC*GAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YS5_017 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.3383

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_43644.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6YS5|1|3|C|1256
6YS5|1|3|U|1257
6YS5|1|3|A|1258
6YS5|1|3|C|1259
*
6YS5|1|3|G|1270
6YS5|1|3|A|1271
6YS5|1|3|U|1272
6YS5|1|3|G|1273

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain o

30S ribosomal protein S14