IL_6YS5_018

3D structure

PDB id

6YS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 30S subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YS5_018 not in the Motif Atlas

Homologous match to IL_5J7L_057

Geometric discrepancy: 0.0778

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6YS5|1|3|C|1300
6YS5|1|3|G|1301
6YS5|1|3|G|1302
6YS5|1|3|A|1303
6YS5|1|3|U|1304
6YS5|1|3|U|1305
*
6YS5|1|3|A|1326
6YS5|1|3|U|1327
6YS5|1|3|G|1328
6YS5|1|3|A|1329
6YS5|1|3|A|1330
6YS5|1|3|G|1331

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S13