IL_6YSI_001
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YSI_001 not in the Motif Atlas
- Homologous match to IL_5J7L_245
- Geometric discrepancy: 0.0587
- The information below is about IL_5J7L_245
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YSI|1|1|G|24
6YSI|1|1|U|25
6YSI|1|1|G|26
6YSI|1|1|G|27
6YSI|1|1|A|28
6YSI|1|1|U|29
6YSI|1|1|G|30
*
6YSI|1|1|C|502
6YSI|1|1|U|503
6YSI|1|1|G|504
6YSI|1|1|A|505
6YSI|1|1|A|506
6YSI|1|1|A|507
6YSI|1|1|C|508
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain M
- 50S ribosomal protein L20
- Chain O
- 50S ribosomal protein L22
- Chain X
- 50S ribosomal protein L32
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