IL_6YSI_004
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GGGAG*CUUUGAUC
- Length
- 13 nucleotides
- Bulged bases
- 6YSI|1|1|U|101
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YSI_004 not in the Motif Atlas
- Homologous match to IL_7RQB_004
- Geometric discrepancy: 0.1194
- The information below is about IL_7RQB_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.2
- Basepair signature
- cWW-tSS-L-tSH-L-R-R-cWW-L
- Number of instances in this motif group
- 18
Unit IDs
6YSI|1|1|G|81
6YSI|1|1|G|82
6YSI|1|1|G|83
6YSI|1|1|A|84
6YSI|1|1|G|85
*
6YSI|1|1|C|98
6YSI|1|1|U|99
6YSI|1|1|U|100
6YSI|1|1|U|101
6YSI|1|1|G|102
6YSI|1|1|A|103
6YSI|1|1|U|104
6YSI|1|1|C|105
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain Q
- 50S ribosomal protein L24
- Chain U
- 50S ribosomal protein L29
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