IL_6YSI_028

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSI_028 not in the Motif Atlas

Homologous match to IL_7RQB_029

Geometric discrepancy: 0.0858

The information below is about IL_7RQB_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_02509.1

Basepair signature

cWW-tSW-cWS-cSH-tWH-R-R-cWW

Number of instances in this motif group

5

Unit IDs

6YSI|1|1|G|855
6YSI|1|1|C|856
6YSI|1|1|A|857
6YSI|1|1|C|858
6YSI|1|1|U|859
*
6YSI|1|1|A|900
6YSI|1|1|A|901
6YSI|1|1|A|902
6YSI|1|1|C|903

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain I

50S ribosomal protein L16