IL_6YSI_044

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSI_044 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.0753

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6YSI|1|1|C|1345
6YSI|1|1|G|1346
6YSI|1|1|A|1347
6YSI|1|1|G|1348
6YSI|1|1|G|1349
*
6YSI|1|1|C|1358
6YSI|1|1|G|1359
6YSI|1|1|U|1360
6YSI|1|1|A|1361
6YSI|1|1|G|1362

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain T

50S ribosomal protein L28

Chain Z

50S ribosomal protein L34