IL_6YSI_046

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

6YSI|1|1|U|1408

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSI_046 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.282

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6YSI|1|1|C|1405
6YSI|1|1|G|1406
6YSI|1|1|A|1407
6YSI|1|1|U|1408
6YSI|1|1|G|1409
*
6YSI|1|1|C|1568
6YSI|1|1|U|1569
6YSI|1|1|A|1570
6YSI|1|1|A|1571
6YSI|1|1|G|1572

Current chains

Chain 1

23S ribosomal RNA

Nearby chains