IL_6YSI_056

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6YSI|1|1|G|1690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSI_056 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0836

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6YSI|1|1|C|1677
6YSI|1|1|G|1678
6YSI|1|1|U|1679
6YSI|1|1|A|1680
6YSI|1|1|A|1681
6YSI|1|1|C|1682
*
6YSI|1|1|G|1687
6YSI|1|1|G|1688
6YSI|1|1|A|1689
6YSI|1|1|G|1690
6YSI|1|1|A|1691
6YSI|1|1|A|1692
6YSI|1|1|G|1693

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2