IL_6YSI_067

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUGA*UCU

Length

7 nucleotides

Bulged bases

6YSI|1|1|U|2057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSI_067 not in the Motif Atlas

Geometric match to IL_4V88_385

Geometric discrepancy: 0.1776

The information below is about IL_4V88_385

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6YSI|1|1|G|2056
6YSI|1|1|U|2057
6YSI|1|1|G|2058
6YSI|1|1|A|2059
*
6YSI|1|1|U|2430
6YSI|1|1|C|2431
6YSI|1|1|U|2432

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain H

50S ribosomal protein L15