IL_6YSI_073
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CGAG*CGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YSI_073 not in the Motif Atlas
- Homologous match to IL_5J7L_333
- Geometric discrepancy: 0.0723
- The information below is about IL_5J7L_333
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
6YSI|1|1|C|2339
6YSI|1|1|G|2340
6YSI|1|1|A|2341
6YSI|1|1|G|2342
*
6YSI|1|1|C|2353
6YSI|1|1|G|2354
6YSI|1|1|A|2355
6YSI|1|1|G|2356
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain S
- 50S ribosomal protein L27
- Chain a
- 50S ribosomal protein L35
Coloring options: