IL_6YSI_078

3D structure

PDB id

6YSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

6YSI|1|1|U|2480

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSI_078 not in the Motif Atlas

Homologous match to IL_5J7L_337

Geometric discrepancy: 0.0947

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6YSI|1|1|A|2448
6YSI|1|1|U|2449
6YSI|1|1|A|2450
*
6YSI|1|1|U|2478
6YSI|1|1|G|2479
6YSI|1|1|U|2480
6YSI|1|1|U|2481
6YSI|1|1|U|2482

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L16