IL_6YSI_090
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GAUAAC*GGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 6YSI|1|1|A|2754
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YSI_090 not in the Motif Atlas
- Homologous match to IL_7RQB_107
- Geometric discrepancy: 0.0762
- The information below is about IL_7RQB_107
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.5
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6YSI|1|1|G|2726
6YSI|1|1|A|2727
6YSI|1|1|U|2728
6YSI|1|1|A|2729
6YSI|1|1|A|2730
6YSI|1|1|C|2731
*
6YSI|1|1|G|2751
6YSI|1|1|G|2752
6YSI|1|1|A|2753
6YSI|1|1|A|2754
6YSI|1|1|G|2755
6YSI|1|1|C|2756
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L6
- Chain F
- 50S ribosomal protein L13
- Chain b
- 50S ribosomal protein L36
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