IL_6YSI_094
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GAUG*CUGAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YSI_094 not in the Motif Atlas
- Homologous match to IL_5J7L_353
- Geometric discrepancy: 0.169
- The information below is about IL_5J7L_353
- Detailed Annotation
- Multiple bulged bases with non-canonical cWW
- Broad Annotation
- Multiple bulged bases with non-canonical cWW
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
6YSI|1|1|G|2832
6YSI|1|1|A|2833
6YSI|1|1|U|2834
6YSI|1|1|G|2835
*
6YSI|1|1|C|2859
6YSI|1|1|U|2860
6YSI|1|1|G|2861
6YSI|1|1|A|2862
6YSI|1|1|C|2863
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L17
- Chain L
- 50S ribosomal protein L19
Coloring options: