IL_6YSI_100
3D structure
- PDB id
- 6YSI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-tigecycline complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UGAUGGUAG*UGAGAGUAA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YSI_100 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.0799
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6YSI|1|5|U|70
6YSI|1|5|G|71
6YSI|1|5|A|72
6YSI|1|5|U|73
6YSI|1|5|G|74
6YSI|1|5|G|75
6YSI|1|5|U|76
6YSI|1|5|A|77
6YSI|1|5|G|78
*
6YSI|1|5|U|95
6YSI|1|5|G|96
6YSI|1|5|A|97
6YSI|1|5|G|98
6YSI|1|5|A|99
6YSI|1|5|G|100
6YSI|1|5|U|101
6YSI|1|5|A|102
6YSI|1|5|A|103
Current chains
- Chain 5
- 5S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- 50S ribosomal protein L16
- Chain R
- 50S ribosomal protein L25
Coloring options: