IL_6YSR_009

3D structure

PDB id

6YSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSR_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.4866

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6YSR|1|A|C|274
6YSR|1|A|C|275
6YSR|1|A|U|276
6YSR|1|A|G|277
6YSR|1|A|A|278
6YSR|1|A|A|279
6YSR|1|A|U|280
6YSR|1|A|C|281
*
6YSR|1|A|G|359
6YSR|1|A|U|360
6YSR|1|A|G|361
6YSR|1|A|A|362
6YSR|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains