IL_6YSR_034

3D structure

PDB id

6YSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6YSR|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSR_034 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.1345

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6YSR|1|A|U|1018
6YSR|1|A|U|1019
6YSR|1|A|A|1020
6YSR|1|A|A|1021
6YSR|1|A|G|1022
6YSR|1|A|U|1023
6YSR|1|A|G|1024
*
6YSR|1|A|C|1140
6YSR|1|A|U|1141
6YSR|1|A|A|1142
6YSR|1|A|A|1143
6YSR|1|A|A|1144

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13