IL_6YSR_138

3D structure

PDB id

6YSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6YSR|1|a|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSR_138 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0964

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6YSR|1|a|C|569
6YSR|1|a|G|570
6YSR|1|a|U|571
6YSR|1|a|A|572
6YSR|1|a|A|573
6YSR|1|a|A|574
6YSR|1|a|G|575
*
6YSR|1|a|C|880
6YSR|1|a|G|881

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S8

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17