3D structure

PDB id
6YSR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 stalled ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAAAC*GGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YSR_150 not in the Motif Atlas
Homologous match to IL_4LFB_033
Geometric discrepancy: 0.0736
The information below is about IL_4LFB_033
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

6YSR|1|a|C|779
6YSR|1|a|A|780
6YSR|1|a|A|781
6YSR|1|a|A|782
6YSR|1|a|C|783
*
6YSR|1|a|G|799
6YSR|1|a|G|800
6YSR|1|a|U|801
6YSR|1|a|A|802
6YSR|1|a|G|803

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain k
30S ribosomal protein S11
Chain u
30S ribosomal protein S21

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