IL_6YSS_009

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

6YSS|1|A|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSS_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.5531

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6YSS|1|A|C|274
6YSS|1|A|C|275
6YSS|1|A|U|276
6YSS|1|A|G|277
6YSS|1|A|A|278
6YSS|1|A|A|279
6YSS|1|A|U|280
6YSS|1|A|C|281
*
6YSS|1|A|G|359
6YSS|1|A|U|360
6YSS|1|A|G|361
6YSS|1|A|A|362
6YSS|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains