IL_6YSS_061

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6YSS|1|A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSS_061 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0773

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6YSS|1|A|C|1686
6YSS|1|A|G|1687
6YSS|1|A|U|1688
6YSS|1|A|A|1689
6YSS|1|A|A|1690
6YSS|1|A|C|1691
*
6YSS|1|A|G|1696
6YSS|1|A|G|1697
6YSS|1|A|A|1698
6YSS|1|A|G|1699
6YSS|1|A|A|1700
6YSS|1|A|A|1701
6YSS|1|A|G|1702

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA