IL_6YSS_080

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

6YSS|1|A|G|2168, 6YSS|1|A|A|2169, 6YSS|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YSS|1|A|G|2124
6YSS|1|A|G|2125
6YSS|1|A|A|2126
6YSS|1|A|G|2127
6YSS|1|A|G|2128
*
6YSS|1|A|C|2160
6YSS|1|A|C|2161
6YSS|1|A|G|2162
6YSS|1|A|A|2163
6YSS|1|A|C|2164
6YSS|1|A|C|2165
6YSS|1|A|U|2166
6YSS|1|A|U|2167
6YSS|1|A|G|2168
6YSS|1|A|A|2169
6YSS|1|A|A|2170
6YSS|1|A|A|2171
6YSS|1|A|U|2172
6YSS|1|A|A|2173
6YSS|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains