IL_6YSS_129

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YSS_129 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0828

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6YSS|1|a|U|409
6YSS|1|a|G|410
6YSS|1|a|A|411
6YSS|1|a|A|412
6YSS|1|a|G|413
6YSS|1|a|A|414
6YSS|1|a|A|415
6YSS|1|a|G|416
*
6YSS|1|a|U|427
6YSS|1|a|G|428
6YSS|1|a|U|429
6YSS|1|a|A|430
6YSS|1|a|A|431
6YSS|1|a|A|432
6YSS|1|a|G|433

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4