IL_6YSS_156
3D structure
- PDB id
- 6YSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAGUU*AAUGUGCCUUCGGGAAC
- Length
- 23 nucleotides
- Bulged bases
- 6YSS|1|a|U|1025, 6YSS|1|a|C|1027, 6YSS|1|a|C|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YSS_156 not in the Motif Atlas
- Homologous match to IL_5J7L_045
- Geometric discrepancy: 0.5466
- The information below is about IL_5J7L_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_13394.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R
- Number of instances in this motif group
- 1
Unit IDs
6YSS|1|a|G|1003
6YSS|1|a|A|1004
6YSS|1|a|A|1005
6YSS|1|a|G|1006
6YSS|1|a|U|1007
6YSS|1|a|U|1008
*
6YSS|1|a|A|1021
6YSS|1|a|A|1022
6YSS|1|a|U|1023
6YSS|1|a|G|1024
6YSS|1|a|U|1025
6YSS|1|a|G|1026
6YSS|1|a|C|1027
6YSS|1|a|C|1028
6YSS|1|a|U|1029
6YSS|1|a|U|1030
6YSS|1|a|C|1031
6YSS|1|a|G|1032
6YSS|1|a|G|1033
6YSS|1|a|G|1034
6YSS|1|a|A|1035
6YSS|1|a|A|1036
6YSS|1|a|C|1037
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain n
- 30S ribosomal protein S14
Coloring options: