IL_6YSS_179

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCCAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

6YSS|1|A|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YSS|1|A|C|1043
6YSS|1|A|C|1044
6YSS|1|A|C|1045
6YSS|1|A|A|1046
6YSS|1|A|G|1047
6YSS|1|A|A|1048
6YSS|1|A|C|1049
6YSS|1|A|A|1050
6YSS|1|A|G|1051
6YSS|1|A|C|1052
*
6YSS|1|A|G|1107
6YSS|1|A|U|1108
6YSS|1|A|C|1109
6YSS|1|A|G|1110
6YSS|1|A|A|1111
6YSS|1|A|G|1112

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain 5

50S ribosomal protein L10

Chain G

50S ribosomal protein L6