IL_6YSS_183

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGUGG*CCACCCUUUAAUG

Length

35 nucleotides

Bulged bases

6YSS|1|A|A|2108, 6YSS|1|A|U|2111, 6YSS|1|A|G|2115, 6YSS|1|A|U|2118, 6YSS|1|A|G|2123, 6YSS|1|A|C|2179, 6YSS|1|A|U|2180

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YSS|1|A|C|2103
6YSS|1|A|C|2104
6YSS|1|A|U|2105
6YSS|1|A|U|2106
6YSS|1|A|G|2107
6YSS|1|A|A|2108
6YSS|1|A|U|2109
6YSS|1|A|G|2110
6YSS|1|A|U|2111
6YSS|1|A|G|2112
6YSS|1|A|U|2113
6YSS|1|A|A|2114
6YSS|1|A|G|2115
6YSS|1|A|G|2116
6YSS|1|A|A|2117
6YSS|1|A|U|2118
6YSS|1|A|A|2119
6YSS|1|A|G|2120
6YSS|1|A|G|2121
6YSS|1|A|U|2122
6YSS|1|A|G|2123
6YSS|1|A|G|2124
*
6YSS|1|A|C|2174
6YSS|1|A|C|2175
6YSS|1|A|A|2176
6YSS|1|A|C|2177
6YSS|1|A|C|2178
6YSS|1|A|C|2179
6YSS|1|A|U|2180
6YSS|1|A|U|2181
6YSS|1|A|U|2182
6YSS|1|A|A|2183
6YSS|1|A|A|2184
6YSS|1|A|U|2185
6YSS|1|A|G|2186

Current chains

Chain A

23S ribosomal RNA

Nearby chains