IL_6YSS_194

3D structure

PDB id

6YSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAG*UGUGCCUUCGGGAAC

Length

19 nucleotides

Bulged bases

6YSS|1|a|U|1025, 6YSS|1|a|C|1027, 6YSS|1|a|U|1030, 6YSS|1|a|C|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YSS|1|a|G|1003
6YSS|1|a|A|1004
6YSS|1|a|A|1005
6YSS|1|a|G|1006
*
6YSS|1|a|U|1023
6YSS|1|a|G|1024
6YSS|1|a|U|1025
6YSS|1|a|G|1026
6YSS|1|a|C|1027
6YSS|1|a|C|1028
6YSS|1|a|U|1029
6YSS|1|a|U|1030
6YSS|1|a|C|1031
6YSS|1|a|G|1032
6YSS|1|a|G|1033
6YSS|1|a|G|1034
6YSS|1|a|A|1035
6YSS|1|a|A|1036
6YSS|1|a|C|1037

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14