IL_6YST_008

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAG*CGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YST_008 not in the Motif Atlas

Homologous match to IL_5J7L_252

Geometric discrepancy: 0.207

The information below is about IL_5J7L_252

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47972.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6YST|1|A|C|269
6YST|1|A|A|270
6YST|1|A|G|271
*
6YST|1|A|C|366
6YST|1|A|G|367
6YST|1|A|A|368
6YST|1|A|U|369
6YST|1|A|G|370

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9