3D structure

PDB id
6YST (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GCAAG*CAACC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YST_029 not in the Motif Atlas
Homologous match to IL_5J7L_274
Geometric discrepancy: 0.2501
The information below is about IL_5J7L_274
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

6YST|1|A|G|875
6YST|1|A|C|876
6YST|1|A|A|877
6YST|1|A|A|878
6YST|1|A|G|879
*
6YST|1|A|C|898
6YST|1|A|A|899
6YST|1|A|A|900
6YST|1|A|C|901
6YST|1|A|C|902

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain M
50S ribosomal protein L16

Coloring options:


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