3D structure

PDB id
6YST (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
6YST|1|A|A|1156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YST_032 not in the Motif Atlas
Homologous match to IL_5J7L_277
Geometric discrepancy: 0.0974
The information below is about IL_5J7L_277
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_38507.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
16

Unit IDs

6YST|1|A|C|998
6YST|1|A|U|999
6YST|1|A|A|1000
6YST|1|A|A|1001
6YST|1|A|G|1002
*
6YST|1|A|C|1153
6YST|1|A|G|1154
6YST|1|A|A|1155
6YST|1|A|A|1156
6YST|1|A|G|1157

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain Q
50S ribosomal protein L20
Chain R
50S ribosomal protein L21
Chain Z
50S ribosomal protein L30

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3869 s