3D structure

PDB id
6YST (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAA*UCAC
Length
40 nucleotides
Bulged bases
6YST|1|A|A|1070
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6YST|1|A|G|1055
6YST|1|A|G|1056
6YST|1|A|A|1057
6YST|1|A|U|1058
6YST|1|A|G|1059
6YST|1|A|U|1060
6YST|1|A|U|1061
6YST|1|A|G|1062
6YST|1|A|G|1063
6YST|1|A|C|1064
6YST|1|A|U|1065
6YST|1|A|U|1066
6YST|1|A|A|1067
6YST|1|A|G|1068
6YST|1|A|A|1069
6YST|1|A|A|1070
6YST|1|A|G|1071
6YST|1|A|C|1072
6YST|1|A|A|1073
6YST|1|A|G|1074
6YST|1|A|C|1075
6YST|1|A|C|1076
6YST|1|A|A|1077
6YST|1|A|U|1078
6YST|1|A|C|1079
6YST|1|A|A|1080
6YST|1|A|U|1081
6YST|1|A|U|1082
6YST|1|A|U|1083
6YST|1|A|A|1084
6YST|1|A|A|1085
6YST|1|A|A|1086
6YST|1|A|G|1087
6YST|1|A|A|1088
6YST|1|A|A|1089
6YST|1|A|A|1090
*
6YST|1|A|U|1101
6YST|1|A|C|1102
6YST|1|A|A|1103
6YST|1|A|C|1104

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 4
50S ribosomal protein L36
Chain 5
50S ribosomal protein L10
Chain I
50S ribosomal protein L11

Coloring options:

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