IL_6YST_063

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases (A, C, G, U)

1699G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YST_063 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0985

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.3

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6YST|1|A|C|1686
6YST|1|A|G|1687
6YST|1|A|U|1688
6YST|1|A|A|1689
6YST|1|A|A|1690
6YST|1|A|C|1691
*
6YST|1|A|G|1696
6YST|1|A|G|1697
6YST|1|A|A|1698
6YST|1|A|G|1699
6YST|1|A|A|1700
6YST|1|A|A|1701
6YST|1|A|G|1702

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA