IL_6YST_065

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAGG*UGGAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YST_065 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2571

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6YST|1|A|G|1719
6YST|1|A|U|1720
6YST|1|A|G|1721
6YST|1|A|A|1722
6YST|1|A|G|1723
6YST|1|A|G|1724
*
6YST|1|A|U|1736
6YST|1|A|G|1737
6YST|1|A|G|1738
6YST|1|A|A|1739
6YST|1|A|G|1740
6YST|1|A|C|1741

Current chains

Chain A

23S ribosomal RNA

Nearby chains