IL_6YST_068

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6YST|1|A|A|1801, 6YST|1|A|C|1816, 6YST|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YST_068 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0843

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6YST|1|A|U|1798
6YST|1|A|G|1799
6YST|1|A|C|1800
6YST|1|A|A|1801
6YST|1|A|A|1802
6YST|1|A|A|1803
6YST|1|A|C|1804
*
6YST|1|A|G|1813
6YST|1|A|G|1814
6YST|1|A|A|1815
6YST|1|A|C|1816
6YST|1|A|G|1817
6YST|1|A|U|1818
6YST|1|A|A|1819
6YST|1|A|U|1820
6YST|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA