3D structure

PDB id
6YST (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UG*UAAA
Length
6 nucleotides
Bulged bases
6YST|1|A|A|1899, 6YST|1|A|A|1900
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YST_070 not in the Motif Atlas
Homologous match to IL_5J7L_315
Geometric discrepancy: 0.1022
The information below is about IL_5J7L_315
Detailed Annotation
Major groove intercalation
Broad Annotation
Major groove intercalation
Motif group
IL_82107.5
Basepair signature
cWW-cWW
Number of instances in this motif group
31

Unit IDs

6YST|1|A|U|1841
6YST|1|A|G|1842
*
6YST|1|A|U|1898
6YST|1|A|A|1899
6YST|1|A|A|1900
6YST|1|A|A|1901

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2

Coloring options:


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