IL_6YST_138

3D structure

PDB id

6YST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUG*CAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YST_138 not in the Motif Atlas

Geometric match to IL_4V88_405

Geometric discrepancy: 0.1458

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

6YST|1|a|A|602
6YST|1|a|U|603
6YST|1|a|G|604
*
6YST|1|a|C|634
6YST|1|a|A|635
6YST|1|a|U|636

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S8

Chain q

30S ribosomal protein S17